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Identify adapter sequences in pacbio reads

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  • #16
    The "--outputSummary" option can be used to generate a list of ZMWs with an associated score, and boolean for passing filter.

    Is the data from an amplified sample? Default HGAP parameters should filter out all stochastic artifacts, I would be concerned about simply filtering out systematic artifacts without understanding where they are coming from. They are not normally observed in sheared genomic DNA sequencing.

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