Hi guys,
I'm trying to run Cerulean to assemble PacBio reads.
I'm following their manual so nothing special in the commands. So far this is what I've completed successfully:
- sawriter .....
- blasr ......
and have the necessary files all in the same folder and with the same <dataname>. It's time now to run cerulean itself:
python src/Cerulean.py --dataname <dataname> --basedir <basedir> \
--nproc <numthreads>
When I run it I get an error after some minutes, on line 54 of the python file:
/usr/local/bin/cerulean: line 54: syntax error near unexpected token `('
That line is:
ArgumentParser(description="Cerulean hybrid assembler v0.1.1")
I'm using python 2.7.3 and ubuntu server, which should work fine.
Any clue on what could that error be related to?
Thanks in advance.
Cheers,
Condomitti.
I'm trying to run Cerulean to assemble PacBio reads.
I'm following their manual so nothing special in the commands. So far this is what I've completed successfully:
- sawriter .....
- blasr ......
and have the necessary files all in the same folder and with the same <dataname>. It's time now to run cerulean itself:
python src/Cerulean.py --dataname <dataname> --basedir <basedir> \
--nproc <numthreads>
When I run it I get an error after some minutes, on line 54 of the python file:
/usr/local/bin/cerulean: line 54: syntax error near unexpected token `('
That line is:
ArgumentParser(description="Cerulean hybrid assembler v0.1.1")
I'm using python 2.7.3 and ubuntu server, which should work fine.
Any clue on what could that error be related to?
Thanks in advance.
Cheers,
Condomitti.
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