Hello everyone,
I have pacbio reads for a bacteria in fastq format of size 2.6 G. I wanted to run a denovo assembly using SPAdes. I used the basic command for running an unpaired pacbio read which is
$./spades.py -s Pacbio.fastq -o /home/spades_run
The issue I am facing now is that it is taking too long for the reads to assemble. Can anyone suggest how to reduce the run time?
Thank you
I have pacbio reads for a bacteria in fastq format of size 2.6 G. I wanted to run a denovo assembly using SPAdes. I used the basic command for running an unpaired pacbio read which is
$./spades.py -s Pacbio.fastq -o /home/spades_run
The issue I am facing now is that it is taking too long for the reads to assemble. Can anyone suggest how to reduce the run time?
Thank you
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