The SMRT pipeline can use "read score" to filter out reads. "Read Score" seems to be defined as the percentage of bases that is expected to be correct in a read. It is a number between 0 to 1.
But how do I calculate this metric? Can I do it from the filtered fastq file? Or do I need to read the bax.h5 files?
But how do I calculate this metric? Can I do it from the filtered fastq file? Or do I need to read the bax.h5 files?
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