difference blasr output in two fasta file

lingling huang

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Join Date: Mar 2016

Posts: 48
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difference blasr output in two fasta file

12-20-2016, 01:14 AM

Hi There,
Anyone can help me to resolve the problem(shown on screenshot), Why it doesn't work for /gencode.v19.pc_transcripts.fa but does work for /gencode.v19.lncRNA_transcripts.fa?
Anyone used to LncRNA Pipeline developed by Alberto Arrigoni https://bitbucket.org/arrigonialbert...line/wiki/Home? What is the final output?
Or, who can tell me the email of Alberto Arrigoni? Thank you so much in advance.
My code:

Code:

ncrna_pipeline -f chrM.fasta -p 3 -c cpat -o human

Any advice or link would be appreciated, please.

Error:

Last edited by lingling huang; 12-20-2016, 01:16 AM.
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