Header Leaderboard Ad


difference blasr output in two fasta file



No announcement yet.
  • Filter
  • Time
  • Show
Clear All
new posts

  • difference blasr output in two fasta file

    Hi There,
    Anyone can help me to resolve the problem(shown on screenshot), Why it doesn't work for /gencode.v19.pc_transcripts.fa but does work for /gencode.v19.lncRNA_transcripts.fa?
    Anyone used to LncRNA Pipeline developed by Alberto Arrigoni https://bitbucket.org/arrigonialbert...line/wiki/Home? What is the final output?
    Or, who can tell me the email of Alberto Arrigoni? Thank you so much in advance.
    My code:
     ncrna_pipeline -f chrM.fasta -p 3 -c cpat -o human
    Any advice or link would be appreciated, please.

    Last edited by lingling huang; 12-20-2016, 01:16 AM.

Latest Articles


  • seqadmin
    A Brief Overview and Common Challenges in Single-cell Sequencing Analysis
    by seqadmin

    ​​​​​​The introduction of single-cell sequencing has advanced the ability to study cell-to-cell heterogeneity. Its use has improved our understanding of somatic mutations1, cell lineages2, cellular diversity and regulation3, and development in multicellular organisms4. Single-cell sequencing encompasses hundreds of techniques with different approaches to studying the genomes, transcriptomes, epigenomes, and other omics of individual cells. The analysis of single-cell sequencing data i...

    01-24-2023, 01:19 PM
  • seqadmin
    Introduction to Single-Cell Sequencing
    by seqadmin
    Single-cell sequencing is a technique used to investigate the genome, transcriptome, epigenome, and other omics of individual cells using high-throughput sequencing. This technology has provided many scientific breakthroughs and continues to be applied across many fields, including microbiology, oncology, immunology, neurobiology, precision medicine, and stem cell research.

    The advancement of single-cell sequencing began in 2009 when Tang et al. investigated the single-cell transcriptomes
    01-09-2023, 03:10 PM