Hi,
I have run the SMRT-Portal RS_HGAP_Assembly.2 protocol.
I am getting a single whole chromosome assembled (~4.4Mb) but there is uneven coverage across the scaffold.
See Figure:
Additionaly the start 15Kb and the 15Kb where the coverage drops is a repeat.
I am unsure how to interperate these results and I am wondering if there has been a misassembly.
Could anyone shed some light on this?
I have run the SMRT-Portal RS_HGAP_Assembly.2 protocol.
I am getting a single whole chromosome assembled (~4.4Mb) but there is uneven coverage across the scaffold.
See Figure:
Additionaly the start 15Kb and the 15Kb where the coverage drops is a repeat.
I am unsure how to interperate these results and I am wondering if there has been a misassembly.
Could anyone shed some light on this?
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