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  • weechingching
    Junior Member
    • Sep 2019
    • 1
    #1

    No new SMRT cell data found in SMRT Portal

    Hi All,

    The minimum requirement for SMRT Cells to be recognized by SMRT Portal is the *.metadata.xml file and all *.bax.h5 and *.bas.h5 files by referring to the link below

    Import and Manage SMRT Cell Data to SMRT Portal - SMRT Analysis
    https://smrt-analysis.readthedocs.io/en/latest/Import-and-Manage-SMRT-Cell-Data-to-SMRT-Portal/


    However, when i tried to import it into SMRT portal, it shows that No new SMRTcell data found. This is the directory hierarchy of all the files look like. Can anyone tell me any files that I'm missing?


    (base) [Chee_Wei@clusterhn SRR5428623]$ ls
    Analysis_Results
    m150803_212153_42216_c100858342550000001823192601241650_s1_p0.metadata.xml
    (base) [Chee_Wei@clusterhn SRR5428623]$ ls Analysis_Results/
    m150803_212153_42216_c100858342550000001823192601241650_s1_p0.1.bax.h5.1
    m150803_212153_42216_c100858342550000001823192601241650_s1_p0.1.subreads.fasta
    m150803_212153_42216_c100858342550000001823192601241650_s1_p0.2.bax.h5.1
    m150803_212153_42216_c100858342550000001823192601241650_s1_p0.2.subreads.fasta
    m150803_212153_42216_c100858342550000001823192601241650_s1_p0.3.bax.h5.1
    m150803_212153_42216_c100858342550000001823192601241650_s1_p0.3.subreads.fasta
    m150803_212153_42216_c100858342550000001823192601241650_s1_p0.bas.h5.1


    Thanks
    Tags: None
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