No new SMRT cell data found in SMRT Portal

weechingching

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Join Date: Sep 2019

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No new SMRT cell data found in SMRT Portal

02-28-2020, 12:03 AM

Hi All,

The minimum requirement for SMRT Cells to be recognized by SMRT Portal is the *.metadata.xml file and all *.bax.h5 and *.bas.h5 files by referring to the link below

https://smrt-analysis.readthedocs.io...o-SMRT-Portal/

However, when i tried to import it into SMRT portal, it shows that No new SMRTcell data found. This is the directory hierarchy of all the files look like. Can anyone tell me any files that I'm missing?

(base) [[email protected] SRR5428623]$ ls
Analysis_Results
m150803_212153_42216_c100858342550000001823192601241650_s1_p0.metadata.xml
(base) [[email protected] SRR5428623]$ ls Analysis_Results/
m150803_212153_42216_c100858342550000001823192601241650_s1_p0.1.bax.h5.1
m150803_212153_42216_c100858342550000001823192601241650_s1_p0.1.subreads.fasta
m150803_212153_42216_c100858342550000001823192601241650_s1_p0.2.bax.h5.1
m150803_212153_42216_c100858342550000001823192601241650_s1_p0.2.subreads.fasta
m150803_212153_42216_c100858342550000001823192601241650_s1_p0.3.bax.h5.1
m150803_212153_42216_c100858342550000001823192601241650_s1_p0.3.subreads.fasta
m150803_212153_42216_c100858342550000001823192601241650_s1_p0.bas.h5.1

Thanks
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