Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
Collapse
 
  • Page of 1
  • Filter
  • Time
  • Show
Clear All
new posts
Previous template Next
  • #1

    No new SMRT cell data found in SMRT Portal

    Hi All,

    The minimum requirement for SMRT Cells to be recognized by SMRT Portal is the *.metadata.xml file and all *.bax.h5 and *.bas.h5 files by referring to the link below

    https://smrt-analysis.readthedocs.io...o-SMRT-Portal/

    However, when i tried to import it into SMRT portal, it shows that No new SMRTcell data found. This is the directory hierarchy of all the files look like. Can anyone tell me any files that I'm missing?


    (base) [Chee_Wei@clusterhn SRR5428623]$ ls
    Analysis_Results
    m150803_212153_42216_c100858342550000001823192601241650_s1_p0.metadata.xml
    (base) [Chee_Wei@clusterhn SRR5428623]$ ls Analysis_Results/
    m150803_212153_42216_c100858342550000001823192601241650_s1_p0.1.bax.h5.1
    m150803_212153_42216_c100858342550000001823192601241650_s1_p0.1.subreads.fasta
    m150803_212153_42216_c100858342550000001823192601241650_s1_p0.2.bax.h5.1
    m150803_212153_42216_c100858342550000001823192601241650_s1_p0.2.subreads.fasta
    m150803_212153_42216_c100858342550000001823192601241650_s1_p0.3.bax.h5.1
    m150803_212153_42216_c100858342550000001823192601241650_s1_p0.3.subreads.fasta
    m150803_212153_42216_c100858342550000001823192601241650_s1_p0.bas.h5.1


    Thanks
    Tags: None
Previous template Next

Latest Articles

Collapse
  • seqadmin
    Genetic Variation in Immunogenetics and Antibody Diversity
    by seqadmin



    The field of immunogenetics explores how genetic variations influence immune responses and susceptibility to disease. In a recent SEQanswers webinar, Oscar Rodriguez, Ph.D., Postdoctoral Researcher at the University of Louisville, and Ruben Martínez Barricarte, Ph.D., Assistant Professor of Medicine at Vanderbilt University, shared recent advancements in immunogenetics. This article discusses their research on genetic variation in antibody loci, antibody production processes,...
    11-06-2024, 07:24 PM
  • seqadmin
    Choosing Between NGS and qPCR
    by seqadmin



    Next-generation sequencing (NGS) and quantitative polymerase chain reaction (qPCR) are essential techniques for investigating the genome, transcriptome, and epigenome. In many cases, choosing the appropriate technique is straightforward, but in others, it can be more challenging to determine the most effective option. A simple distinction is that smaller, more focused projects are typically better suited for qPCR, while larger, more complex datasets benefit from NGS. However,...
    10-18-2024, 07:11 AM
View All

ad_right_rmr

Collapse

News

Collapse
Topics Statistics Last Post
ASHG 2024 Highlights – Part Two by seqadmin
Started by seqadmin, Today, 11:09 AM
0 responses
22 views
0 likes
 Last Post seqadmin
by seqadmin
Today, 11:09 AM  
ASHG 2024 Highlights – Part One by seqadmin
Started by seqadmin, Today, 06:13 AM
0 responses
20 views
0 likes
 Last Post seqadmin
by seqadmin
Today, 06:13 AM  
Seq-Scope Expands Possibilities for High-Resolution Gene Expression Analysis by seqadmin
Started by seqadmin, 11-01-2024, 06:09 AM
0 responses
30 views
0 likes
 Last Post seqadmin
by seqadmin
11-01-2024, 06:09 AM  
New Model Aims to Explain Polygenic Diseases by Connecting Genomic Mutations and Regulatory Networks by seqadmin
Started by seqadmin, 10-30-2024, 05:31 AM
0 responses
21 views
0 likes
 Last Post seqadmin
by seqadmin
10-30-2024, 05:31 AM  
View All
Working...
X