SNPsaurus is now offering whole genome genotyping. We can do complete genome sequencing at read depths appropriate for genotyping for species with small genomes at a similar price per sample as our nextRAD reduced representation genotyping.
We make the sequencing libraries, sequence on Illumina with paired-end 2x150bp reads to 10X (for haploids) or 20X (for diploids) read depth, then align the reads to a reference (or a de novo reference that we make from a subset of samples) and call genotypes.
The service ranges from $49/sample for 384 yeast samples to $94/sample for 96 fly samples that have a genome of 100 Mb. Please see http://snpsaurus.com/small-genome-ge...me-sequencing/ for a price breakdown of different example projects.
We make the sequencing libraries, sequence on Illumina with paired-end 2x150bp reads to 10X (for haploids) or 20X (for diploids) read depth, then align the reads to a reference (or a de novo reference that we make from a subset of samples) and call genotypes.
The service ranges from $49/sample for 384 yeast samples to $94/sample for 96 fly samples that have a genome of 100 Mb. Please see http://snpsaurus.com/small-genome-ge...me-sequencing/ for a price breakdown of different example projects.