There were some errors when I submit the matching jobs.
Here is the error message:
There was openPBS patched on my cluster.
Want some helps, thanks
Here is the error message:
Code:
[zhan@head mapping_F_25_2]$ submit_scripts_to_PBS.pl -j JOB_LIST.txt & [1] 17307 [zhan@head mapping_F_25_2]$ Parse a job list file containing script names and run them on PBS. SUBMIT: output_ALIGN_1_1: /home/zhan/solid/bifxTrainingData_10panels_auto/mappin g_F_25_2/scripts/output_ALIGN_1_1.sh qsub: illegal -N value Use of uninitialized value in concatenation (.) or string at /data/tools/Corona/ lib/perl/PBSJob.pm line 102. [ERROR] qsub: (17308): -- Sleeping 5 seconds and retrying [zhan@head mapping_F_25_2]$ qsub: illegal -N value Use of uninitialized value in concatenation (.) or string at /data/tools/Corona/lib/perl/PBSJob.pm line 102. [ERROR] qsub: (17336): -- Sleeping 10 seconds and retrying qsub: illegal -N value Use of uninitialized value in concatenation (.) or string at /data/tools/Corona/lib/perl/PBSJob.pm line 102. [ERROR] qsub: (17385): -- [FATAL]: Submission of job failed after 3 retries Job submission output_ALIGN_1_1 failed.
Code:
[zhan@head mapping_F_25_2]$ qmgr Max open servers: 4 Qmgr: p s # # Create queues and set their attributes. # # # Create and define queue workq # create queue workq set queue workq queue_type = Execution set queue workq enabled = True set queue workq started = True # # Create and define queue tracking # create queue tracking set queue tracking queue_type = Execution set queue tracking enabled = True set queue tracking started = True # # Create and define queue secondary # create queue secondary set queue secondary queue_type = Execution set queue secondary enabled = True set queue secondary started = True # # Set server attributes. # set server scheduling = True set server default_queue = workq set server log_events = 511 set server mail_from = adm set server query_other_jobs = True set server resources_default.nodect = 1 set server resources_default.nodes = 1 set server scheduler_iteration = 600 set server node_pack = False
Comment