Tweet
Hello! Can anybody let me know, how can I get coverage data of a single gene from BAM file. Thanks.
-
-
Where contig is the name of the chromosome, 12 is the start position of your gene and 1000 is the end position.Code:samtools depth -r contig:12-1000 single.bam
-
Use BedTools -- coverageBed should be the program you want.
[edit]
Actually TiborNagy's method is easier for a single gene. Give that a try first.
[end of edit]Comment
-
Technological advances have led to drastic improvements in the field of precision medicine, enabling more personalized approaches to treatment. This article explores four leading groups that are overcoming many of the challenges of genomic profiling and precision medicine through their innovative platforms and technologies.
Somatic Genomics
“We have such a tremendous amount of genetic diversity that exists within each of us, and not just between us as individuals,”...05-24-2024, 01:16 PM -
The sequencing world is rapidly changing due to declining costs, enhanced accuracies, and the advent of newer, cutting-edge instruments. Equally important to these developments are improvements in sequencing analysis, a process that converts vast amounts of raw data into a comprehensible and meaningful form. This complex task requires expertise and the right analysis tools. In this article, we highlight the progress and innovation in sequencing analysis by reviewing several of the...05-06-2024, 07:48 AM
Comment