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Can anyone help me to get a pipeline for analyzing Agilent ChIP-chip data analysis using R package for bacteria. I used Ringo but there is problem in following command.
>pA <- extractProbeAnno(RG, "agilent", genome="mouse",
+ microarray="Agilent Tiling Chr17")
What changes should be made in files so it extractProbeAnno can read for bacteria.
>pA <- extractProbeAnno(RG, "agilent", genome="mouse",
+ microarray="Agilent Tiling Chr17")
What changes should be made in files so it extractProbeAnno can read for bacteria.