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Truseq Rapid Exome TArget Bed file's Gene Names?
İs there a way to get gene names of the Truseq Rapid exome Target Bed file whihc only includes target coordinates?
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Gene Annotation tools?
Hi all,
I am looking for a user friendly tool to annotate bed files at gene regulatory regions in mouse and human. Also, it would be great...
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Agilent SureSelect bed files
Hello,
Can anyone tell me what the difference is between these bed files supplied by Agilent for their SureSelect Human All Exon V2 kit:...
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Tophat: generate junctions.bed file from BAM file
Dear all,
I have previously mapped RNA-seq samples to the human genome using Tophat 2.0.6. This generated an "accepted_hits.bam" result...
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Agilent capture baits
I am setting up targeted sequencing using custom Agilent capture system. The design of the capture baits returned nearly 100,000 probes. The information...
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Agilent SureSelect exome enrichment bed file
I was wondering where can I donwload the bed file for the Agilent SureSelect exome enrichment for human. Someone has mentioned eArray web site. Doesn...
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BED file is malformed with unreadable codes
Although I edited the BED file to remove the headlines and random contigs which is not present in the reference dictionary, I still got the following...
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target region file for samtools (.bed file)
Hello,
I just started to use samtools to call SNPs on some target regions for crop wheat, should I sort the .bed file by chromosomes and...
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vcftools site filter using bedfile
Hi all
I am trying to filter my vcf file in vcftools using a bed file. I am consistently getting an output vcf with 0 sites retained. Following...