I just downloaded the preformatted DB for nr from https://ftp.ncbi.nlm.nih.gov/blast/db/nr , and ran
blastx -db nr -max_target_seqs 1 -taxids...
6 results in 0.0021 seconds.
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exclude MULTISPECIES from output of command line blastx
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Why is this blast script giving me empty tabular output?
Instead of using an ncbi database, I ran the makeblastdb command on a fasta file I downloaded from ncbi.
The following script will produce... -
NCBI/GenBank BLAST Output XML Parser Tool
see Blast 2.2.28 -
Odd_values_In_blastx_outputs
Hi all
I am getting some odd values in my blast outputs. The evalues in the outputs don't seem to correspond properly with the percent_ids... -
Comparing e-values from two blast reports
Hey guys,
I'm having some trouble writing a script to compare the e-values from two separate blast reports.
I'm trying to... -
Help plz. Cannot get blastx XML output for analysis of de novo aphid transcriptome.
Hello,
I cannot seem to get blastx to run when the output format is XML. I need the blastx XML for to GO analysis using Blast2GO. The tabular...Last edited by matthew.christenson; 04-13-2012, 05:17 AM.
