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  • NCBI/GenBank BLAST Output XML Parser Tool

    see Blast 2.2.28
    Last edited by cement_head; 08-20-2013, 01:54 AM. Reason: update

  • #2
    This seems like a lot of unnecssary work now that BLAST itself offers descriptions in the tabular output,
    This is an open letter to the NCBI BLAST+ team to request two simple enhancements which I think would be extremely useful - first and foremo...

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    • #3
      Originally posted by maubp View Post
      This seems like a lot of unnecssary work now that BLAST itself offers descriptions in the tabular output,
      http://blastedbio.blogspot.co.uk/201...criptions.html
      2.2.26 (2.2.27) didn't have this feature, and when I talked to NCBI they stated "no plans to include" - we wrote the script well over a year ago. I'm glad they did it.
      Last edited by cement_head; 08-20-2013, 01:55 AM.

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      • #4
        I'd like to think my open letter blog post helped motivate them to add this

        It wasn't clear from your post announcing your script that it pre-dated BLAST 2.2.28+ being released.

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        • #5
          Originally posted by maubp View Post
          I'd like to think my open letter blog post helped motivate them to add this

          It wasn't clear from your post announcing your script that it pre-dated BLAST 2.2.28+ being released.
          I was floored when I called them up and asked them why one couldn't extract that information with 2.2.26 - they said "why would anyone want to do that?" - so we wrote the script - anyway, thanks for pointing out that 2.2.28 does this (I hadn't checked).

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