I just downloaded the preformatted DB for nr from https://ftp.ncbi.nlm.nih.gov/blast/db/nr , and ran
blastx -db nr -max_target_seqs 1 -taxids 2 -query ... ...
mainly to find bacterial organism and blastname. But the output description and scientific name is just:
"MULTISPECIES: chemotaxis protein ...." and "Bacteria"
How can I get same output as NCBI blastx websearch: ie.
"chemotaxis protein CheW [Bosea vestrisii]" and "Bosea vestrisii[a-proteobacteria]"
Grateful for any suggestions.
blastx -db nr -max_target_seqs 1 -taxids 2 -query ... ...
mainly to find bacterial organism and blastname. But the output description and scientific name is just:
"MULTISPECIES: chemotaxis protein ...." and "Bacteria"
How can I get same output as NCBI blastx websearch: ie.
"chemotaxis protein CheW [Bosea vestrisii]" and "Bosea vestrisii[a-proteobacteria]"
Grateful for any suggestions.