Microbiome research has led to the discovery of important connections to human and environmental health. Sequencing has become a core investigational tool in microbiome research, a subject that we covered during a recent webinar. Our expert speakers shared a number of advancements including improved experimental workflows, research involving transmission dynamics, and invaluable analysis resources. This article recaps their informative presentations, offering insights...
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Strategies for Investigating the Microbiome
Microbiome research has led to the discovery of important connections to human and environmental health. Sequencing has become a core investigational tool in microbiome research, a subject that we covered during a recent webinar. Our expert speakers shared a number of advancements including improved experimental workflows, research involving transmission dynamics, and invaluable analysis resources. This article recaps their informative presentations, offering insights... -
Using Kraken2 with the human telomere to telomere genome (T2T)
Has anyone tried and succeeded in using the newest human genome version (T2T) in Kraken2 instead of the human hg38?
There are rumors that...Last edited by tatianaorli; 11-30-2023, 04:27 AM. -
Seeking engineered demo data to verify human read removal software
Hello,
I'm looking for demo data to assess how well (or badly) human reads removal works in our microbiome pipeline. That is, I need input... -
How to normalize/pool a 16S library when samples are highly variable concentrations??
Hi all,
I've been having this issue that has been plaguing my PhD. Some of my sequencing runs come back with terrible uneven read coverage....Last edited by samd; 03-21-2020, 09:36 AM. -
discrepancy in miseq runs due to sample prep protocol?
Hi all,
I have had an issue where my first ever Miseq run was great quality: 100k reads per sample with a nice distribution and then after... -
Anyone using QIAGEN 16S/ITS Panel with MiSeq?
Hi there!
Anyone using QIAGEN 16S/ITS Panel with MiSeq?
We have good libraries with good profiles, quantified by TapeStation,... -
[Microbiome] Core Compare
I have a microbiome dataset and I am trying to compare different groups of mice (symptomatic animals, asymptomatic animals and a control group).
... -
Microbiome and Metagenome Data analysis workshop, April 1-5, 2019
Ceske Budejovice, Czech Republic, See here for full event details and apply online
This workshop covers microbiomics / metagenomics analysis... -
Introducing Skymap: a single data matrix for each omic layer for each species
Skymap is a standalone database that aims to offer:
1. a single data matrix for each omic layer for each species that spans >200k sequencing...Last edited by brianytsui; 08-12-2018, 04:15 PM. -
how to represent my ngs results
Hello!
I am a new member of your fantastic society and I am also making my first attempt on next generation sequencing.
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metagenomics tool
Gaia 2.0 is now online:
- valid for any type of analysis (16S/18S, ITS, WGS, metatranscriptomics)
- valid for any type of sample... -
Microbiome and Metagenome Data analysis workshop, June 4-8, 2018
Ceske Budejovice, Czech Republic, See here for full event details and apply online
This workshop covers microbiomics / metagenomics analysis... -
Microbiome and Metagenome Data analysis workshop, June 4-8, 2018
Ceske Budejovice, Czech Republic, See here for full event details and apply online
This workshop covers microbiomics / metagenomics analysis... -
MetaSUB Forensics Challenge @CAMDA ISMB Chicago
The MetaSUB International Consortium (metasub.org) is building a longitudinal metagenomic map of mass-transit systems and other public spaces across the... -
MetaSUB Forensics Challenge @CAMDA ISMB Chicago
The MetaSUB International Consortium (metasub.org) is building a longitudinal metagenomic map of mass-transit systems and other public spaces across the...
