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Pipeline for inferring tissues from liquid biopsy data
In many cases, solid tissue biopsies cannot be performed in humans. If a liquid biopsy is performed on humans, we can assess microRNA, RNA, and DNA in...
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Finding Tripartite Data Groups for microRNA-TF-Gene Regulatory Circuits
I'm pretty new to the world of scripting and have a problem in my research lab that, if a script could be written, would have days worth of manual labor...
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Low miRNA count - small RNA NGS
Hello to All,
I am a newcomer in this area and recently we initiated one small RNA NGS project to study the differential expression of miRNA in...
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mirDeep2 mapper.pl is making an empty reads_collapsed_vs_genome.arf file - help?!
I'm having trouble running mirDeep2, and I was hoping someone could help me out. I ran mirDeep2 fine the other day, but now it's mysteriously no longer...
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Target prediction between complementary RNA-seq and Small-RNA-seq data sets
Hi everyone-
Short background: I have Illumina sequence data on mRNA and microRNA from the same samples. Theoretically these two separate...
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RNA-Seq: Deep sequencing reveals abundant noncanonical retroviral microRNAs in B-cell
Deep sequencing reveals abundant noncanonical retroviral microRNAs in B-cell leukemia/lymphoma.
Proc Natl Acad Sci U S A. 2013 Jan 23...Last edited by NicoBxl; 02-06-2013, 03:11 AM.
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Mito-generated microRNAs?
Is anyone aware if there are microRNAs transcribed from the mitochondrial genome? I have seen research on microRNAs (both immature and mature) that were...
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State-of-the art in microRNA alignment
Hi,
Is there any generally accepted best way to align and measure the expression of micro-RNAs ? Looking at the literature it seems that pretty...
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Upcoming Cancer microRNA Webinar
Title: Recent Work & Current Methods in Cancer microRNA Research – The 2nd in a series of microRNA Webinars presented by LC Sciences
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Home-made ABi SOLiD Total RNA-Seq ??
This kit is too expensive. Anyone with knowledge, information, or a friend who might know a guy who once made a home-made version of this kit, please...