I am a newbie in here and wanted to ask a question that I am not able to find its answer. I have a file which has couple letters as :...
17 results in 0.0022 seconds.
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Generating limited amount of random numbers in Perl for a known range
Hi!
I am a newbie in here and wanted to ask a question that I am not able to find its answer. I have a file which has couple letters as :... -
Error while using tool for linkage analysis.
Hey all.. I am currently trying to use LINKDATAGEN and facing a frequent problem mentioned by many users. My sample set is human and I performed exome... -
How to run TOFU analysis in the perl ?
Now I am working on the Iso_seq Analysis using the Tofu program, I am intended to intergrated all the analysis (including classify,cluster,Removing Redundant... -
Create perl program
Hi,
I have two sequence file.I want only the mathching sequences which is present on both files and save that output in third file...Can... -
Need help to edit multiple sequence alignment?
I have a large concatenated protein multiple sequence alignment. One of the species have many undetermined 'X' amino acid. Such column will probably not... -
sort contigs based on fasta header
Hello All,
I have a problem that I am looking for some input on.
I have been using the genome assembler SPAdes, which... -
Calculating coverage based on full insert size from paired-end data
Hi! all,
I would like to calculate coverage from paired-end data. I can do this with bedtools but I want to make sure of one thing. That... -
A program to extract the reads and modify the seq ID by adding weight
Hi everyone,
I have a problem in executing the perl script (found online) is given below, a script t0 compare 2 files
1)... -
Metatranscriptomics data analysis:
Hi,
I have a problem with my perl script can anyone please help me out.
I work on Meta transcriptomics data.I assembled... -
gene feature converter
Hi guys,
i hv got a GO file for my differentially expressed genes file, it goes like:
FBgn00001 GO:0016301 [Name:****(annotation)]... -
Extracting the pattern not matching
Hi there,
I have a list of sequence id and I am trying to extract the sequences from the proteome of the organism using these ids. I used... -
"uninitialized value" in ABACAS
Hello all,
I've recently starting working with ABACAS as part of the PAGIT suite of programs. After one run with altered parameters for... -
Array of arrays in perl
Hi everyone,
I'm trying to write a perl programme that will split up a .fasta header:
gi|4140243|dbj|AB022087.1|_Xenopus_laevis_mRNA_for_cytochrome_P450,_complete_cds,_clone_MC1... -
[PERL] Text files manipulation/reorganisation
Hello everyone,
guess what, I got a question!
Here it is:
I got two files organised a little like fasta files (but they are txt files),... -
Any script to parse HMMsearch results?
I have 146 resulting files of HMMsearch. I used 146 Hmm models to generate these files. Could someone share me any script to parse HmmSearch results?
