I have 146 resulting files of HMMsearch. I used 146 Hmm models to generate these files. Could someone share me any script to parse HmmSearch results?
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No script handy but you can code a bit and have BioPerl installed, try using this module
See Synopsis for code snippets. -
And if you prefer Python to Perl, Biopython 1.61 includes a new experimental module SearchIO which includes support for HMMER output (v2 and v3):
Also, if you ask HMMER for the table output you may not even need a complicated parser at all.Comment
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