using EST library as extra information

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papori

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Join Date: Dec 2010

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#1

using EST library as extra information

05-13-2012, 07:37 AM

Hi all,
My organism has no reference yet.
But it has EST library & related organism genome.
Can i use this information as extra to De-novo assembly?
Maybe as guideline?

Thanks,
Pap
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ians

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#2

05-15-2012, 02:50 PM

Are you assembling the genome or transcriptome?
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papori

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#3

05-15-2012, 09:05 PM

transcriptome
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HESmith

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#4

05-16-2012, 06:23 AM

This link describes a strategy for incorporating RNA-Seq data into de novo assembly.
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