Hi everyone,
I have 1 billion reads from Illumina GA and have been trying to run an assembly for a 0.8 Gb genome using Soapdenovo v 1.05. At some point during the reading process, the assembler stops running. All I can see in the log is that only some lanes were read. I have tried running only some of the reads, but it's been hard to understand if the problem is volume, reads headers, or any of the libraries.
Any help or suggestion will be greatly appreciated!
raindancedani*
I have 1 billion reads from Illumina GA and have been trying to run an assembly for a 0.8 Gb genome using Soapdenovo v 1.05. At some point during the reading process, the assembler stops running. All I can see in the log is that only some lanes were read. I have tried running only some of the reads, but it's been hard to understand if the problem is volume, reads headers, or any of the libraries.
Any help or suggestion will be greatly appreciated!
raindancedani*
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