Hi ..I was running velvetg with various parameters but for different coverege cutoff iam getting the different results...how to optimize the coverege cutoff ..
thanks
thanks
-
-
In the manual there is a description of how generate an histogram that can help you in decide several parameters.
In general the best way to proceed is make some test on a little data set. You keep the parameters that give the best result on the small data set and you use them on the whole data set
Francesco
-
Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?
Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating...10-14-2026, 09:55 AM -
Researchers using sequencing and genomics tools often have to make trade-offs. They can choose between speed or scale, short reads or long-range information, or targeted panels or a view of the whole transcriptome. New technologies that have been released this year are built to address those tough choices.
We asked six companies the same four questions to learn about their latest products. The new technologies bring a lot to the table, including rethinking sequencing...
Comment