cegma genome_map error

[lilicano]

Hi all,

I followed christoph installation log file for cegma 2.4 which is very well explained.

http://korflab.ucdavis.edu/datasets/cegma/ubuntu_instructions_2.txt

I followed your log file and tried to install cegma 2.5 in an ubuntu machine but got the same error of genome_map not found.

Note: my fasta headers are ok (without weird characters such "|")

copied to /etc/perl
- FAlite.pm
- Cegma.pm

installed
- wise
- wise-doc
- wise2.2.3-rc7
- geneid_v1.4.4
- blast+2.2.30
- hmmer3.0

also set the environment for:

~./profile
PATH=$PATH:~/geneid/bin/./
export PATH

PATH=$PATH:~/ncbi-blast-2.2.30+/bin/./
export PATH

PATH=$PATH:~/hmmer-3.0/bin/./
export PATH

PATH=$PATH:~/CEGMA_v2.5/bin/./
export PATH


~./bashrc
export CEGMA=/home/wrparks/Applications/CEGMA_v2.5
export PERL5LIB="/usr/lib/perl/5.18:/home/wrparks/Applications/CEGMA_v2.5/lib"
export WISECONFIGDIR=/home/wrparks/Applications/wise2.2.3-rc7/wisecfg

---
So if a run cegma inside the bin folder as ./cegma it seems to be running ok as shown below but...
wrparks@wrparks-Precision-T7610:~/Applications/CEGMA_v2.5/bin$ ./cegma
cegma


PROGRAM:
cegma - 2.5

Core Eukaryotic Genes Mapping Approach

----
....but when i tried to run my file it fails and gives me the genome_map not found error as shown below:

wrparks@wrparks-Precision-T7610:~/Applications/CEGMA_v2.5/bin$ ./cegma --genome Ph_HDM502AA_DNAassbly_velvetk71_filt500contigs_2905.fan --output Ph_HDM502AA_DNAassbly_velvetk71_filt500contigs_2905_cegma.output


********************************************************************************
** MAPPING PROTEINS TO GENOME (TBLASTN) **
********************************************************************************

RUNNING: genome_map -n genome -p 6 -o 5000 -c 2000 -t 1 ./data/kogs.fa Ph_HDM502AA_DNAassbly_velvetk71_filt500contigs_2905.fan 2>Ph_HDM502AA_DNAassbly_velvetk71_filt500contigs_2905_cegma.output.cegma.errors
FATAL ERROR when running genome_map 512: ""


Ending CEGMA

wrparks@wrparks-Precision-T7610:~/Applications/CEGMA_v2.5/bin$ ls


any suggestions would be greatly appreciated!

Lili