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  • Chromosome assembly with next-gen data?

    Hey all,

    I've just seen that the Turkey and Panda genomes (assembled from 454+Illumina reads and only Illumina reads respectively) now are up on Pre Ensembl with complete chromosomes.

    The Panda assembly consists of over 80,000 scaffolds, and I would very much like to know how they've assigned each scaffold to a certain chromosome, and also how they can know the internal order of the scaffolds in each chromosome. Does anyone have a clue??

    I'm assembling a large genome myself, but with 100,000 scaffolds and a linkage map with only 200 sites I have no idea how to get full chromosome sequences..

    Any help would be appreciated!
    Linnéa

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