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  • Taipan !!!!!!!!!

    Unable to run taipan assembler, it reads the paired end fastq file then stops

    Code:
    ./taipan -f datafastq/sg/Myco/abc/ERR486827.fastq -k 10 -t 10 -o 2 -v 0 -c 100
    Screen shows

    Code:
    Reading sequences initiated
    i:398381, s:0, tm:116.34, mtf:0/0,  E Skip
    Command exited with non-zero status 139

  • #2
    That does not look like a paired end file (unless the reads are interleaved into one file).

    Comment

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