Can anyone recommend a software for finding DMRs in Chipseq?

KYR

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Join Date: May 2012

Posts: 18
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Can anyone recommend a software for finding DMRs in Chipseq?

10-10-2014, 03:23 PM

We have a dataset of aligned and normalized data (originally from chipseq methylation) and we'd like to find DMRs.

I thought of USeq, though our data are already normalized so I'm not sure where to start from there
Tags: chip-seq, dmr analysis; methyl-seq;
comingme

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Join Date: Feb 2010

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#2

10-11-2014, 11:37 PM

Is it bisulfite data? If yes, you may use moabs.

Originally posted by KYR View Post

We have a dataset of aligned and normalized data (originally from chipseq methylation) and we'd like to find DMRs.

I thought of USeq, though our data are already normalized so I'm not sure where to start from there
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Can anyone recommend a software for finding DMRs in Chipseq?

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