Hi,
Was converting the .sai to .sam and saw this error:
Anyone seen this before? Any thought what might be going on?
Here's the command I used:
The bwa aln before this step went well - no problems.
Working with bwa version: 0.5.9-r16
Thanks,
Narayanan
Was converting the .sai to .sam and saw this error:
Code:
[bwa_aln_core] convert to sequence coordinate... [bwt_restore_sa] SA-BWT inconsistency: seq_len is not the same. Abort!
Here's the command I used:
Code:
bwa samse -f testset.sam db.fa testset.sai testset.fastq
Working with bwa version: 0.5.9-r16
Thanks,
Narayanan
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