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  • #1

    randomness assessment

    Hi,everyone .recently I am studying RNA-seq and related analysis . one thing I am quite interested in is the randomness assessment . To make it clearer ,we need to know how reads are distributed on the whole genome ,such as the coverage and depth of coverage . Does anyone know any tools or softwares to help me to do this . Just like the picture I give below.（Blue represents gene number ,red coverage ,green log2(reads number),and x is the whole genome or just one chromosome）

    thanks!
    tiger
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    Last edited by tigeagle; 01-02-2012, 08:54 AM.
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