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  • Aholton
    Member
    • Jul 2012
    • 23

    #1

    Building a GTF file

    How would I go about building a GTF file from either the FASTA file or from this infromation
  • TiborNagy
    Senior Member
    • Mar 2010
    • 329

    #2
    I think in FASTA there is no enough information to create a GTF file, but genebank files can be converted by this one.

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    • Aholton
      Member
      • Jul 2012
      • 23

      #3
      Thank you very much! I'm starting the process now.

      Comment

      • Aholton
        Member
        • Jul 2012
        • 23

        #4
        Running Python

        Ok I can't seem to get the python program to run, I've moved the file over to our server and tried to run it using the command given -
        "cat file.gb | gb2gtf.py > file.gtf"
        by inserting my files location for file.gb and then putting the output for file.gtf. I still receive the error -
        gb2gtf.py: command not found

        *****
        Had to include the directory for the program as well
        *****
        Last edited by Aholton; 09-04-2012, 12:25 PM. Reason: Solved Issue

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