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  • Software for splicing sites dectection using RNA-seq?

    Dear expert,

    Are there any software to detect splice sites/events using RNA-seq?

    Thank you.

    MATS:


    SpliceSeq
    SpliceSeq: A Resource for Analysis and Visualization of RNA-Seq Data on Alternative Splicing and Its Functional Impacts

  • #2
    I'm also looking for the same thing. These are some of the software I found that are related to splicing detection. I'm eager to know which of them have been compared and which one(s) perform better:
    1. Cufflinks
    2. DEXSeq
    3. MapSplice
    4. AStalavista
    5. Flux Capacitor
    6. SOAPsplice
    7. HMMSplicer
    8. MISO
    9. MATS
    10. SplicingCompass
    11. SpliceTrap
    12. SeqMonk
    13. SpliceSeq

    Comment


    • #3
      14. SplitSeek

      It seems it is hot field.

      Comment

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