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  • NCBI standards for genome annotation after contig reduction

    Hi community,

    I have been using a bacterial draft genome from GenBank for RNA-seq project. In order to reduce genome contig number, I used L_RNA_scaffolder http://www.ncbi.nlm.nih.gov/pubmed/24010822tool, so I had to reannotate again this new genome.

    My doubt is how to publish now my RNA-seq results because I have the differential expressed genes with new annotations. I heard about the 'correspondence tables' but I really don't now how this work.

    Thank you so much,

    All the best, Bernardo

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