[Aman Mahajan]

Installation of RSEQ - help required.

I really like the program rSeq by Hui Jiang.

1st convert your reads to standard fasta format. The software has a mapping program and then a script that calculates RPKM for each reference transcript.

Also...its free!

I am having problem running RSEQtools. This is the installation procedure.

Installation
============

The installation steps have to be executed in the following order:

1) Install the GNU Scientific Library

( I have done the 1st step)


2) Install BIOS - Have not been able to carry out this step.

- Set the following environment variables:
BIOINFOCONFDIR=/pathTo/RSEQtools/bios/conf
BIOINFOGSLDIR=/pathTo/gsl-X.XX

- Compiling BIOS:
cd pathTo/RSEQtools/bios
make
make prod


Thanks .