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  • Aman Mahajan
    Member
    • Jan 2012
    • 22
    #16
    Installation of RSEQ - help required.

    Originally posted by jgibbons1 View Post
    I really like the program rSeq by Hui Jiang.

    1st convert your reads to standard fasta format. The software has a mapping program and then a script that calculates RPKM for each reference transcript.

    Also...its free!
    I am having problem running RSEQtools. This is the installation procedure.

    Installation
    ============

    The installation steps have to be executed in the following order:

    1) Install the GNU Scientific Library

    ( I have done the 1st step)


    2) Install BIOS - Have not been able to carry out this step.

    - Set the following environment variables:
    BIOINFOCONFDIR=/pathTo/RSEQtools/bios/conf
    BIOINFOGSLDIR=/pathTo/gsl-X.XX

    - Compiling BIOS:
    cd pathTo/RSEQtools/bios
    make
    make prod


    Thanks .

      Comment

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