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  • fgh1124
    Member
    • Jan 2010
    • 15

    #1

    One question about Tophat

    When I use Tophat to get the unqiue reads which just mapped to one location in the genome, I have any problems. When I get the sam file, I filter it with the criterion that the last column is "NH:i:1", but these reads also have more than one location in the genome. I want to know how to reslove this question. Thanks for your attention.

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