Hi there
I have ran a RNA-seq on Illumina GII, and processed the bam files on the Galaxy server. Everything ran smoothly untill I tried to run Cuffdiff on may assembled transcript files which always yields an error as this
566: Cuffdiff on data 492, data 493, and data 521: CDS diff
An error occurred running this job: cuffdiff v0.9.3 (1649)
cuffdiff -q -p 8 -Q 0 -c 1000 --FDR 0.050000 -N -r /galaxy/data/mm9/sam_index/mm9.fa /galaxy/main_database/files/002/338/dataset_2338625.dat /galaxy/main_database/files/002/337/dataset_2337232.dat /galaxy/main_database/files/002/337
Has somebody ever ran into this kind of problem (the Glaxy team sais this is a Cufflinks problem, but no answers yet from those guys ...)
Thanks
I have ran a RNA-seq on Illumina GII, and processed the bam files on the Galaxy server. Everything ran smoothly untill I tried to run Cuffdiff on may assembled transcript files which always yields an error as this
566: Cuffdiff on data 492, data 493, and data 521: CDS diff
An error occurred running this job: cuffdiff v0.9.3 (1649)
cuffdiff -q -p 8 -Q 0 -c 1000 --FDR 0.050000 -N -r /galaxy/data/mm9/sam_index/mm9.fa /galaxy/main_database/files/002/338/dataset_2338625.dat /galaxy/main_database/files/002/337/dataset_2337232.dat /galaxy/main_database/files/002/337
Has somebody ever ran into this kind of problem (the Glaxy team sais this is a Cufflinks problem, but no answers yet from those guys ...)
Thanks
Comment