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Application of sequencing to RNA analysis (RNA-Seq, whole transcriptome, SAGE, expression analysis, novel organism mining, splice variants)
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Started by jgoecks, 11-29-2010, 02:06 PM
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27 responses
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by suparmin
11-07-2016, 01:02 AM
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Started by chenyudr, 05-24-2016, 06:36 AM
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4 responses
1,769 views
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by cmbetts
05-27-2016, 09:01 AM
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Started by daanum, 05-22-2016, 02:31 AM
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12 responses
2,379 views
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by daanum
05-25-2016, 06:54 PM
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Started by chc*, 05-25-2016, 04:18 AM
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3 responses
1,507 views
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Started by ivygreen, 01-26-2016, 10:03 AM
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6 responses
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by Michael.Ante
05-24-2016, 10:47 PM
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Started by [email protected], 05-19-2016, 12:32 PM
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3 responses
1,694 views
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Started by meabh, 05-24-2016, 03:02 AM
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1 response
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by Michael.Ante
05-24-2016, 07:32 AM
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Started by jeow, 05-23-2016, 09:33 AM
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2 responses
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by jeow
05-23-2016, 09:54 AM
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Tophat2: prepare unmapped.bam file for input into a tophat run on alternative genome
by danielsbrewer
Started by danielsbrewer, 01-13-2014, 02:48 AM
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10 responses
11,333 views
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by fchatonnet
05-20-2016, 12:57 AM
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Started by PratD, 05-19-2016, 11:36 PM
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by PratD
05-19-2016, 11:36 PM
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Started by KateShepard, 04-15-2016, 06:37 AM
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by colindaven
05-19-2016, 03:27 AM
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by SEQadmin2
Childhood cancers, effectively fatal 60 years ago, are now curable for up to 85% of children with access to contemporary treatments and...-
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05-08-2026, 01:42 AM -
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by GATTACATLove this - good data definitely starts from good input, and poor input can only give relatively poor data. I particularly like the mention of Nanodrop/absorbance based methods for quantification. It's such a toss up if you'll get an accurate reading or what amounts to a randomly generated number, and a lot of library/sequencing related issues can be traced back to poor quant.
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Channel: Articles
07-01-2026, 11:43 AM -
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by SEQadmin2
I’m not a sequencing expert. I’m a purification scientist who uses NGS to evaluate workflows my group develops. With this perspective, we think about the sample first and the NGS workflow second. The sequencer is an exceptionally honest reporter, but it can only report on what you give it, so whether you get clean, interpretable data from an NGS workflow is largely determined before you begin.
Here are nine questions we think about, in roughly the order they matter, before...-
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by SEQadmin2
Data variability is still an issue in sequencing technologies despite the advances in reproducibility and accuracy of these platforms. But the problem does not originate in the sequencing itself, but in the previous steps, before the sample reaches the sequencer.
The first step is collection, followed by preservation and sample preparation for analysis. Most scientists overlook those steps, but not being careful might just be skewing the experiment’s results.
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Channel: Articles
06-02-2026, 10:05 AM -
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Started by SEQadmin2, 07-02-2026, 11:08 AM
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by SEQadmin2
07-02-2026, 11:08 AM
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Started by SEQadmin2, 06-30-2026, 05:37 AM
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by SEQadmin2
06-30-2026, 05:37 AM
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Started by SEQadmin2, 06-26-2026, 11:10 AM
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by SEQadmin2
06-26-2026, 11:10 AM
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