I perform H3K9me3 ChIP experiment and built the libarary acoording illumina's ChIP seq libarary protocol. The analysis of the data is as follows:
raw read: 46891730
map read: 42812364
uniq read: 40442380
used read:13409805
map ratio: 91.30%
uniq read: 86.25%
used ratio:28.6%
region: 253
The used raed/used ratio/region is too low. I cannot figure out the problem, could anyone help me?? Thanks!
raw read: 46891730
map read: 42812364
uniq read: 40442380
used read:13409805
map ratio: 91.30%
uniq read: 86.25%
used ratio:28.6%
region: 253
The used raed/used ratio/region is too low. I cannot figure out the problem, could anyone help me?? Thanks!
