Hi
I am doing my first chip seq analysis. I have an issue with my samples, the cluster numbers are a lot lower than I would want. The cluster numbers range from 29k to 69k for these samples and for others range from 132-145k.
However I guess it all depends on peaks vs. background,
I m wondering if I can get good data from ~50k clusters ?
I'm not familiar with how the analysis is done though.
Please f someone can help me with understanding what does mean the cluster number, what can have an effect on the number of clusters?
Thank you very much for help, Gio
I am doing my first chip seq analysis. I have an issue with my samples, the cluster numbers are a lot lower than I would want. The cluster numbers range from 29k to 69k for these samples and for others range from 132-145k.
However I guess it all depends on peaks vs. background,
I m wondering if I can get good data from ~50k clusters ?
I'm not familiar with how the analysis is done though.
Please f someone can help me with understanding what does mean the cluster number, what can have an effect on the number of clusters?
Thank you very much for help, Gio
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