Tweet
Are there any new alternatives out there for size selection other than the Pippin prep? I saw some older posts on the LabChip XT but don't know if that is even manufactured at this point. I also saw some on the E-gel; it didn't look like it was useful for libraries. Information on any recent worthy alternatives that should be considered would be appreciated (100 - 750 bp range).
-
-
SageElf
Also, has anyone used the SageElf? It fractionates the entire DNA smear into separate tubes by rotating the electrical field 90 degrees. -
Coastal Genomics has a very high throughput instrument.Comment
-
We will also be showcasing a lower-throughput option that can integrate with robotic platforms or be used by a technician as SLAS in Washington DC. Please message me if you would like more details.Comment
-
Differential Expression and Data Visualization: Recommended Tools for Next-Level Sequencing Analysis
After covering QC and alignment tools in the first segment and variant analysis and genome assembly in the second segment, we’re wrapping up with a discussion about tools for differential gene expression analysis and data visualization. In this article, we include recommendations from the following experts: Dr. Mark Ziemann, Senior Lecturer in Biotechnology and Bioinformatics, Deakin University; Dr. Medhat Mahmoud Postdoctoral Research Fellow at Baylor College of Medicine;...05-23-2023, 12:26 PM -
Continuing from our previous article, we share variant analysis and genome assembly tools recommended by our experts Dr. Medhat Mahmoud, Postdoctoral Research Fellow at Baylor College of Medicine, and Dr. Ming "Tommy" Tang, Director of Computational Biology at Immunitas and author of From Cell Line to Command Line.
Variant detection and analysis tools
Mahmoud classifies variant detection work into two main groups: short variants (<50...05-19-2023, 10:03 AM -
With new tools and computational resources being released regularly, it can be hard to determine which are best suited for the analysis process and which older tools continue to be maintained. In an effort to assist the sequencing community, we interviewed three highly skilled bioinformaticians about their recommended tools for several important analysis applications.
Quality control and preprocessing tools
“Garbage in, garbage out” is a popular...05-16-2023, 10:11 AM
Comment