Repeat Sequence Library Generation

[edge]

Repeat sequence such as transposable elements, centromere-related sequence, telomere related sequence, etc are high abundant in plant genome.
Does anybody got any idea regarding generate the repeat sequence library such as RepBase?
Normally what is the general size of transposable elements, centromere-related sequence, telomere related sequence, etc in plant genome?
Hopefully we can discuss and share idea here

[ychang]

you want to sequence the repeat seqs or remove the repeat seq from the library?

[edge]

Firstly I plan to generate a repeat sequence library.
After then, I want to mask the repeat sequence in my query genome based on the repeat sequence library that I created.
Do you have any idea or suggestion to archive my goal?
Thanks first

[ychang]

How about we chat by QQ? my Email: [email protected]