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Hi,
Can PHLAT (HLA genotyping) be used with single cell RNA-seq (e.g. 10x platform)?
Thanks and good day.
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Can PHLAT (HLA genotyping) be used with single cell RNA-seq (e.g. 10x platform)?
Thanks and good day.
β
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malonzm1 you should be able to do this. I thought I saw a pre-print on something like this. I can't remember if it's this one (https://www.biorxiv.org/content/10.1...06.09.495569v1) or not. Maybe I can dig it up if this doesn't look right to you. -
Hi @GenomicSeq,
Thanks! Would you know if it requires first demultiplexing the 10x fastq files?Comment
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What about smart-seq2 and fluidigm C1?Comment
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malonzm1 sorry for the late response. I just realized you replied. But yeah you would have to demultiplex them. Although I'm not super familiar with the Fluidigm C1. What specifically is your question with that?Comment
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