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  • chrisbala
    Member
    • Jan 2010
    • 82
    #1

    DESeq getVarianceStabilizedData

    Hi everyone,

    I'm using DEseq (Developmental version) on MAC OSX.

    I'm trying to use the getVarianceStabilizedData function and am getting an error:

    Error in getVarianceStabilizedData(cds) :
    could not find function "estimateVarianceFunctionForMatrix"

    Is anyone else having this trouble? Any solutions?

    Thanks!
    Tags: deseq
  • Simon Anders
    Senior Member
    • Feb 2010
    • 995
    #2
    Hi Chris,

    currently, there is quite some development going on in the developmental version. Maybe I accidently broke something with this week's changes. Can you sent me all your commands, so I can try myself?

    Simon

    Comment

    • chrisbala
      Member
      • Jan 2010
      • 82
      #3
      Vsd

      Hi Simon,

      I just emailed you my commands. Let me know if you need further info.

      Thanks!

      Comment

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