DESeq getVarianceStabilizedData

[chrisbala]

Hi everyone,

I'm using DEseq (Developmental version) on MAC OSX.

I'm trying to use the getVarianceStabilizedData function and am getting an error:

Error in getVarianceStabilizedData(cds) :
could not find function "estimateVarianceFunctionForMatrix"

Is anyone else having this trouble? Any solutions?

Thanks!

[Simon Anders]

Hi Chris,

currently, there is quite some development going on in the developmental version. Maybe I accidently broke something with this week's changes. Can you sent me all your commands, so I can try myself?

Simon

[chrisbala]

Vsd

Hi Simon,

I just emailed you my commands. Let me know if you need further info.

Thanks!