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  • chrisbala
    Member
    • Jan 2010
    • 82
    #1

    DESeq getVarianceStabilizedData

    Hi everyone,

    I'm using DEseq (Developmental version) on MAC OSX.

    I'm trying to use the getVarianceStabilizedData function and am getting an error:

    Error in getVarianceStabilizedData(cds) :
    could not find function "estimateVarianceFunctionForMatrix"

    Is anyone else having this trouble? Any solutions?

    Thanks!
    Tags: deseq
    • Simon Anders
      Senior Member
      • Feb 2010
      • 995
      #2
      Hi Chris,

      currently, there is quite some development going on in the developmental version. Maybe I accidently broke something with this week's changes. Can you sent me all your commands, so I can try myself?

      Simon

        Comment

        • chrisbala
          Member
          • Jan 2010
          • 82
          #3
          Vsd

          Hi Simon,

          I just emailed you my commands. Let me know if you need further info.

          Thanks!

            Comment

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