How to run SIFT in Linux?

clarissaboschi

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Join Date: Apr 2010

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#1

How to run SIFT in Linux?

03-20-2012, 07:01 AM

Hi, I installed SIFT software in Linux (http://sift.jcvi.org/), but I don’t know how to run (command lines) and how should be the input file for non human genomes (thousands of SNPs).

I did not find any information.

I know that I need a file with the protein sequences, but the substitutions should be in the same file with the coordinates?

thanks
C
Tags: linux, sift, snp
ersgupta

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Join Date: Jun 2011

Posts: 26
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07-22-2012, 07:25 AM

download the code and the database from the sift website and follow the instructions in the readme... i guess its pretty straight forward.. lemme knw if u have any specific doubt in that...

Last edited by ersgupta; 07-22-2012, 07:30 AM.
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How to run SIFT in Linux?

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