Unconfigured Ad

Collapse
X
 
  • Filter
  • Time
  • Show
Clear All
new posts
  • totalnew
    Member
    • Apr 2009
    • 46

    BreakDancer problems

    Does anyone ever use BreakDancer to detect GSV?

    I downloaded it from http://genome.wustl.edu/tools/cancer-genomics, but I found I can't run it successfully, I don't know if I use correct command, does
    anyone successfully apply BreakDancer on PE libs? Would you please provide me some examples?

    thanks
  • pickw
    Junior Member
    • Aug 2009
    • 5

    #2
    You can find it here

    Comment

    • bioinfosm
      Senior Member
      • Jan 2008
      • 483

      #3
      Could you post your feedback and comments on using the tool?
      --
      bioinfosm

      Comment

      • totalnew
        Member
        • Apr 2009
        • 46

        #4
        Originally posted by bioinfosm View Post
        Could you post your feedback and comments on using the tool?
        I am still running the program, the tool is very easy to use, but I may have questions during the running, I will track this thread to post all problems I meet.

        Comment

        • jfshao1984
          Junior Member
          • Mar 2008
          • 5

          #5
          After decompressing, there is only one file named "BreakDancer.release-0.0.1r56",and how to use ?
          I find that the file is a combination of several perl scripts,but i don't know how to use it.

          Comment

          • simobioinfo
            Member
            • Aug 2014
            • 40

            #6
            Hi,
            I have problems in installing breakdancer.
            I downloaded the zip file from sourceforce and decompressed it.
            I found two suddirectories, perl and cpp.
            I try to make in cpp directory but I'm not able to compile breakdancer.
            Could anyone help me for this issue?
            Thanks

            Comment

            Latest Articles

            Collapse

            • SEQadmin2
              Proteomic Platforms: How to Choose the Right Analytical Strategy to Improve Detection and Clinical Applications
              by SEQadmin2


              Proteomics platforms are evolving rapidly, with advances in mass spectrometry and affinity-based approaches expanding what researchers can detect and at what scale. As the field moves toward deeper proteome coverage and clinical applications, scientists face an increasingly complex landscape of tools. This article will explore how researchers are navigating these choices to find the right platform for their work.

              The systematic characterization of the human proteome has
              ...
              Yesterday, 11:48 AM
            • SEQadmin2
              Advanced Sequencing Platforms Tackle Neuroscience’s Toughest Genomics Problems
              by SEQadmin2



              Genomics studies in neuroscience face a special challenge due to the brain’s complexity and scarcity of samples. Mapping changes in cell type and state using conventional next-generation sequencing methods remains challenging. Advances in technologies like single-cell sequencing, spatial transcriptomics, and long-read sequencing have opened the door to deeper studies of the brain and diseases like Alzheimer’s, amyotrophic lateral sclerosis (ALS), and schizophrenia.
              ...
              07-09-2026, 11:10 AM
            • SEQadmin2
              Cancer Drug Resistance: The Lingering Barrier to Rising Survival
              by SEQadmin2



              Cancer survival rates have significantly increased in the last few decades in the United States, reaching a combined 70% 5-year survival rate by 2021. Behind this number, there are years of research to find new therapies, drug targets, and early detection methods. But there is one core challenge that keeps slowing down these advances, and it’s about drug resistance.

              There is no single reason why many patients don’t respond to treatment as expected. Cancer is...
              07-08-2026, 05:17 AM

            ad_right_rmr

            Collapse

            News

            Collapse

            Topics Statistics Last Post
            Started by SEQadmin2, Yesterday, 11:10 AM
            0 responses
            9 views
            0 reactions
            Last Post SEQadmin2  
            Started by SEQadmin2, 07-13-2026, 10:26 AM
            0 responses
            30 views
            0 reactions
            Last Post SEQadmin2  
            Started by SEQadmin2, 07-09-2026, 10:04 AM
            0 responses
            41 views
            0 reactions
            Last Post SEQadmin2  
            Started by SEQadmin2, 07-08-2026, 10:08 AM
            0 responses
            25 views
            0 reactions
            Last Post SEQadmin2  
            Working...