Hello,
I am a newbie in this avenue and I have just managed to generate some population sequencing data. I have generated the vcf files using Unified Genotyper (GATK) and then converted the vcf into plink . I did a pairwise LD matrix analysis and have the *.ld data sitting but I have no way to visualize it.
I tried Haploview but since my data is not human genome data, it spits out errors for chromosome number (3R in my case).
Would anyone be able to help me with visualizing this data please? My honours thesis depends upon it.
~Rahul.
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Proteins are often described as the workhorses of the cell, and identifying their sequences is key to understanding their role in biological processes and disease. Currently, the most common technique used to determine protein sequences is mass spectrometry. While still a valuable tool, mass spectrometry faces several limitations and requires a highly experienced scientist familiar with the equipment to operate it. Additionally, other proteomic methods, like affinity assays, are constrained...-
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Despite advancements in sequencing platforms and related sample preparation technologies, certain sample types continue to present significant challenges that can compromise sequencing results. Pedro Echave, Senior Manager of the Global Business Segment at Revvity, explained that the success of a sequencing experiment ultimately depends on the amount and integrity of the nucleic acid template (RNA or DNA) obtained from a sample. “The better the quality of the nucleic acid isolated...-
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