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  • flobpf
    Member
    • Apr 2010
    • 76

    #1

    BFAST easyalign default

    Hi,

    I was wondering what the defaults for BFAST postprocess command for paired end SOLiD reads are? With the -p command, it gives

    insertSizeAvg: 0.000000
    insertSizeStdDev: 0.000000
    Does this mean it is flexible or that those are indeed the specified values? I'm running BFAST easyalign with paired end reads obtained from a gel band 60bp-180bp and I was interested in knowing whether I could specify these values through easyalign/if default values are flexible to take the range into consideration/i need to run each command in easyalign separately through a pipe...

    Thanks
    Last edited by flobpf; 11-05-2012, 04:44 PM. Reason: clarity

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