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flobpf

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Join Date: Apr 2010

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BFAST easyalign default

11-05-2012, 04:41 PM

Hi,

I was wondering what the defaults for BFAST postprocess command for paired end SOLiD reads are? With the -p command, it gives

insertSizeAvg: 0.000000
insertSizeStdDev: 0.000000

Does this mean it is flexible or that those are indeed the specified values? I'm running BFAST easyalign with paired end reads obtained from a gel band 60bp-180bp and I was interested in knowing whether I could specify these values through easyalign/if default values are flexible to take the range into consideration/i need to run each command in easyalign separately through a pipe...

Thanks

Last edited by flobpf; 11-05-2012, 04:44 PM. Reason: clarity
Tags: bfast, paired end, postprocess, solid

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