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  • User001
    Junior Member
    • Sep 2012
    • 6
    #1

    HugeSeq Pipeline

    Does anyone have experience using the HugeSeq pipeline (link below)?
    http://hugeseq.snyderlab.org/?d1319850


    The tools in the pipeline are pretty mainstream (eg BWA, SAMtools, GATK, BreakDancer, Pindel, CNVnator, and BreakSeq), but I haven't found anybody discussing it on the forum. It's nice that somebody integrated these programs as part of a free software package.

    Any thoughts on this software?
    Tags: bwa, hugeseq, pipeline, samtools, variant
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