count v dispersion plot

stephenhart

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Join Date: Sep 2011

Posts: 16
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#1

count v dispersion plot

04-30-2013, 04:06 AM

I am analyzing my RNA-seq data with cummeRbund. I have four conditions, 5 biological replicates per condition. Why do the count vs dispersion plots look more or less identical for all four conditions? I can see from the cummeRbund vignette that this is supposed to be the case; I just don't know why.

Any insights would be appreciated.

Thanks.
Tags: cummerbund, rnaseq, statistical analysis
jp.

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Join Date: Jul 2013

Posts: 142
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#2

07-18-2013, 04:04 AM

Di you get the answer ?
If yes, may you please explain me ?

Originally posted by stephenhart View Post

I am analyzing my RNA-seq data with cummeRbund. I have four conditions, 5 biological replicates per condition. Why do the count vs dispersion plots look more or less identical for all four conditions? I can see from the cummeRbund vignette that this is supposed to be the case; I just don't know why.

Any insights would be appreciated.

Thanks.
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